Użytkowniczka:Ask/lista: Różnice pomiędzy wersjami
Przejdź do nawigacji
Przejdź do wyszukiwania
| (Nie pokazano 1 pośredniej wersji utworzonej przez tego samego użytkownika) | |||
| Linia 10: | Linia 10: | ||
* [[Rosetta]][http://www.rosettacommons.org/software/index.html] | * [[Rosetta]][http://www.rosettacommons.org/software/index.html] | ||
* [[pymol]] [http://www.pymolwiki.org] (Molecular Graphics System PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface. File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.) | * [[pymol]] [http://www.pymolwiki.org] (Molecular Graphics System PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface. File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.) | ||
| + | * [[Lumerical FDTD]] [http://www.lumerical.com/fdtd_parallel_description.php] | ||
| + | Do akt. apl. | ||
| − | |||
| − | |||
* [[ProtoMol]] (2.1.1 -> 3.2) | * [[ProtoMol]] (2.1.1 -> 3.2) | ||
* [[Gromacs]] (4.5.1 -> 4.5.2) | * [[Gromacs]] (4.5.1 -> 4.5.2) | ||
| Linia 20: | Linia 20: | ||
Do akt. opis | Do akt. opis | ||
* [[FreeFEM]] | * [[FreeFEM]] | ||
| − | + | * [[NWChem]] | |
Do op. | Do op. | ||
*[[Allinea DDT]] | *[[Allinea DDT]] | ||
Aktualna wersja na dzień 12:43, 9 cze 2011
Do za.
- BigDFT (GPU support, PRACE)
- CP2K (PRACE)
- Crystal
- Amber
- Firefly (problem z linkowaniem)
- DALI [1]
- Mayavi [2]
- Rosetta[3]
- pymol [4] (Molecular Graphics System PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface. File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.)
- Lumerical FDTD [5]
Do akt. apl.
Do akt. opis
Do op.
- Allinea DDT
- ANSYS - dla mechaników, na razie udostępniamy licencję, w lutym przechodzimy na krajową i wtedy zaplanować inst.
- APBS [6]
- Camfr
- CFOUR [7]
- Hmmer
- Matlab (knitro)
- MOPAC (stara wersja, .f, nowa płatna)
- MPB
- OpenBabel
- Xaim [8]
- LAMMPS
- t-coffee
- ARPACK, FFTW, GSL, GMP, MPFR, MPC
- OFED
- I/O libs: NetPBM, NetCDF, HDF5
Komercyjne:
- http://www.molegro.com/products.php
- COMSOL (http://www.comsol.com/products/multiphysics/) - platon, może kdm?
Ze wsparciem dla GPU